Publications
Formation and Growth of Oligomers: A Monte Carlo Study of an Amyloid Tau Fragment.
PLoS Comput. Biol. 4(12), e1000238, 2008.
D. Li, S. Mohanty, A. Irbäck, S. Huo
A Novel Mutant Cardiac Troponin C Disrupts Molecular Motions Critical for Calcium Binding Affinity and Cardiomyocyte Contractility.
Biophysical J. 94, 3577-3589. 2008. (On the Cover of May 1st issue)
C. Lim, H. Yang, M. Yang, C. Wang, J. Shi, E. A. Berg, D.
R. Pimentel, J. K. Gwathmey, R. J. Hajjar, M. Helmes, C. Costello, S. Huo,
R. Liao
Predicting the Folding Pathway of Engrailed Homeodomain with a Probabilistic Roadmap Enhanced Reaction-path Algorithm.
Biophysical J. 94, 1622-1629, 2008.
D. Li, H. Yang, L. Han, S. Huo
Evaluation of Configurational Entropy Methods from Peptide Folding-Unfolding Simulation.
J. Phys. Chem. B. 111:13807-13813, 2007.
D. Li, M. Khanlarzadeh, J. Wang, S. Huo, R. Brüschweiler
Structural and Pathway Complexity of β-strand Reorganization within Aggregates of Human Transthyretin(105-115) Peptide.
J. Phys. Chem. B. 111: 5425-5433, 2007.
D. Li, L. Han, S. Huo
Temperature-Dependent Probabilistic Roadmap: Algorithm for Calculating Variationally Optimized Conformational Transition Pathways.
J. Chem. Theory Comput. 3: 17-25, 2007.
H. Yang, H. Wu, D. Li, L. Han, S. Huo
Sequence-Dependent Unfolding Pathway Plays a Critical Role in the Amyloidogenicity of Transthyretin.
Biochemistry. 45: 11992-12002, 2006.
M. Yang, B. Yordanov Y. Levy, R. Brüschweiler, and S. Huo
Potential Influence of Asp in the Ca2+ Coordination Position 5 of Parvalbumin on the Calcium Binding Affinity: A Computational Study.
J. Inorg. Biochem. 100: 1879–1887, 2006.
J. Zhao, D. J. Nelson, S. Huo
Peptide Plane Can Flip in Two Opposite Directions: Implication in Amyloid Formation of Transthyretin.
J. Phys. Chem. B. 110: 5829-5833, 2006.
M. Yang, M. Lei, B. Yordanov, S. Huo
Initial Conformational Changes of Human Transthyretin under Partially Denaturing Conditions.
Biophysical J. 89: 433-443, 2005.
M. Yang, M. Lei, R. Bruschweiler, S. Huo
Intrinsic versus Mutation Dependent Instability/flexibility: A Comparative Analysis of the Structure and Dynamics of Wild-type Transthyretin and its Pathogenic Variants.
J. Struct. Biol. 148: 153-168, 2004.
M. Lei, M. Yang, S. Huo
Why is Leu55 ® Pro55 Transthyretin Variant the Most Amyloidogenic: Insight from Molecular dynamics Simulations of Transthyetin Monomers.
Protein Sci. 12: 1222-1231, 2003.
Computational Alanine Scanning of the 1:1 Human Growth Hormone-Receptor Complex.
J. Comput. Chem. 23: 15-27, 2002.
S. Huo, I. Massova, P.A. Kollman
The MaxFlux Algorithm for Calculating Variationally Optimized Reaction Paths for Conformational Transitions in Many Body Systems at Finite Temperature
J. Chem. Phys., 107: 5000-5006, 1997.