Peer-reviewed articles
Hibbett, D. S., and R. Vilgalys. 1991. Evolutionary relationships of Lentinus to the Polyporaceae: evidence from restriction analysis of enzymatically amplified ribosomal DNA. Mycologia 83: 425-439. PDF
Bruns, T. D., R. Vilgalys, S. M. Barnes, D. Gonzalez, D. S. Hibbett, D. J. Lane, L. Simon, S. Stickel, T. M. Szaro, W. G. Weisburg, and M. L. Sogin. 1992. Evolutionary relationships within the fungi: analyses of nuclear small subunit rRNA sequences. Molecular Phylogenetics and Evolution 1: 231-241.
Hibbett, D. S. 1992. Ribosomal RNA and fungal systematics. Transactions of the Mycological Society of Japan 33: 533-556.
Hibbett, D. S., S. Murakami, and A. Tsuneda. 1993. Hymenophore development and evolution in Lentinus. Mycologia 85: 428-443. PDF
Hibbett, D. S., S. Murakami, and A. Tsuneda. 1993. Sporocarp ontogeny in Panus: evolution and classification. American Journal of Botany 80: 1336-1348. PDF
Hibbett, D. S., and R. Vilgalys. 1993. Phylogenetic relationships of Lentinus (Basidiomycotina) inferred from molecular and morphological characters. Systematic Botany 18: 409-433.
Vilgalys, R., J. S. Hopple, and D. S. Hibbett. 1994. Phylogenetic implications of generic concepts in fungi: the impact of molecular systematic studies. Mycologia Helvetica 6: 73-91.
Fukuda, M. Y. Nakai, D. S. Hibbett, T. Matsumoto, and Y. Hayashi. 1994. Mitochondrial DNA restriction fragment length polymorphisms in natural populations of Lentinula edodes. Mycological Research 98: 169-175.
Hibbett, D. S., A. Tsuneda, and S. Murakami. 1994. The secotioid form of Lentinus tigrinus: genetics and development of a fungal morphological innovation. American Journal of Botany 81: 466-478. PDF
Hibbett, D. S., A. Tsuneda, and S. Murakami. 1994. Post-meiotic nuclear behavior in Lentinus, Panus, and Neolentinus. Mycologia 86: 725-732. PDF
Hibbett, D. S., and R. G. Thorn. 1994. Nematode-trapping in Pleurotus tuberregium. Mycologia 86: 696-699. PDF
Hibbett, D. S., A. Tsuneda, Y. Fukumasa-Nakai, and M. J. Donoghue. 1995. Phylogenetic diversity in shiitake inferred from nuclear ribosomal DNA sequences. Mycologia 87: 618-638.
Hibbett, D. S., D. Grimaldi, and M. J. Donoghue. 1995. Cretaceous mushrooms in amber. Nature 377: 487.
Hibbett, D. S., and M. J. Donoghue. 1995. Progress toward a phylogenetic classification of the Polyporaceae through parsimony analyses of ribosomal DNA sequences. Canadian Journal of Botany 73(Suppl. 1): S853-S861.
Hibbett, D. S. 1996. Phylogenetic evidence for horizontal transmission of Group 1 introns in the nuclear ribosomal DNA of mushroom-forming fungi. Molecular Biology and Evolution 13: 903-917. PDF
Hibbett, D. S., and M. J. Donoghue. 1996. Implications of phylogenetic studies for conservation of genetic diversity in shiitake mushrooms. Conservation Biology 10: 1321-1327. PDF
Hibbett, D. S., D. Grimaldi, and M. J. Donoghue. 1997. Fossil mushrooms from Cretaceous and Miocene ambers and the evolution of homobasidiomycetes. American Journal of Botany 84: 981-991. PDF
Hibbett, D. S., M. J. Donoghue, and P. B. Tomlinson. 1997. Is Phellinites digiustoi the oldest homobasidiomycete? American Journal of Botany 84: 1005-1011. PDF
Hibbett, D. S., E. M. Pine, E. Langer, G. Langer, and M. J. Donoghue. 1997. Evolution of gilled mushrooms and puffballs inferred from ribosomal DNA sequences. Proceedings of the National Academy of Sciences, U.S.A. 94: 12002-12006. PDF
Hibbett, D. S., and M. J. Donoghue. 1998. Integrating phylogenetic analysis and classification in fungi. Mycologia 90:347-356.
Hibbett, D. S., K. Hansen, and M. J. Donoghue. 1998. Phylogeny and biogeography of Lentinula inferred from an expanded rDNA dataset. Mycological Research 102: 1041-1049. PDF
Hansen, K., D. S. Hibbett, and D. H. Pfister. 1999. Phylogenetic relationships of Phillipsia inferred from ribosomal DNA intergenic transcribed spacer sequences. Mycologia 91: 299-314.
Pine, E. M., D. S. Hibbett, and M. J. Donoghue. 1999. Evolutionary relationships of cantharelloid and clavarioid fungi. Mycologia 91: 944-963.
Hughey, B. D., G. C. Adams, T. D. Bruns, and D. S. Hibbett. 2000. Phylogeny of Calostoma, the gelatinous stalked puffball, based on nuclear and mitochondrial ribosomal DNA sequences. Mycologia 92: 94-104.
Hibbett, D. S., Luz-Beatriz Gilbert, and Michael J. Donoghue. 2000. Evolutionary instability of ectomycorrhizal symbioses in basidiomycetes. Nature 407: 506-508. PDF
Taylor J. W., D. J. Jacobson, S. Kroken, T. Kasuga, D. M. Geiser, D. S. Hibbett, and M. C. Fisher. 2000. Phylogenetic species recognition and species concepts in fungi. Fungal Genetics and Biology 31: 21-32. PDF
Hibbett, D. S. 2001. Shiitake mushrooms and molecular clocks: historical biogeography of Lentinula. Journal of Biogeography 28: 231-241. PDF
Hibbett, D. S., and M. J. Donoghue. 2001. Analysis of correlations among wood decay mechanisms, mating systems, and substrate ranges in homobasidiomycetes. Systematic Biology 50: 215-242. PDF
Binder, M., and D. S. Hibbett. 2001. Phylogenetic relationships of the marine gasteromycete Nia vibrissa. Mycologia 93: 679-688.
Wu, S.-H., D. S. Hibbett, and M. Binder. 2001. Phylogenetic relationships of Aleurodiscus sensu lato and related genera. Mycologia 93: 720-731.
Hibbett, D. S., and M. Binder. 2001. Evolution of marine mushrooms. Biological Bulletin 201: 319-322. PDF
Binder, M., and D. S. Hibbett. 2002. Higher-level phylogenetic relationships of homobasidiomycetes (mushroom-forming fungi) inferred from four rDNA regions. Molecular Phylogenetics and Evolution 22: 76-90. PDF
Wang., Z., M. Binder, and D. S. Hibbett. 2002. A new species of Cudonia based on morphological and molecular data. Mycologia 94: 641-650. PDF
Hibbett, D. S., and M. Binder. 2002. Evolution of complex fruiting body morphologies in homobasidiomycetes. Proceedings of the Royal Society of London Series B. 269: 1963-1969. PDF
Hibbett, D. S., M. Binder, Z. Wang, and Y. Goldman. 2003. Another fossil agaric from Dominican amber. Mycologia. 95: 685-687. PDF
Redberg, G. L., R. Rodriguez, J. Ammirati, and D. S. Hibbett. 2003. Phylogenetic relationships of Bridgeoporus nobilissimus inferred from rDNA sequences. Mycologia 95: 836-845. PDF
Bodensteiner, P., M. Binder, R. Agerer, J.-M. Moncalvo and D. S. Hibbett. 2004. Phylogenetic diversity of cyphelloid forms in the homobasidiomycetes. Molecular Phylogenetics and Evolution 33: 501-515. PDF
Wang, Z., M. Binder, Y.-C. Dai, and D. S. Hibbett. 2004. Phylogenetic relationships of Sparassis inferred from nuclear and mitochondrial ribosomal DNA and a protein-coding gene (rpb2). Mycologia 96:1013-1027. PDF
Desjardin, D. E., Z. Wang, M. Binder, and D. S. Hibbett. 2004. Sparassis cystidiosa sp. nov. from Thailand is described using morphological and molecular data. Mycologia 96:1010-1014. PDF
Egger, K. N., and D. S. Hibbett. 2004. The evolutionary implications of reciprocal exploitation in mycorrhizas. Canadian Journal of Botany 82: 1110-1121. PDF
Lutzoni, F., F. Kauff, C. J. Cox, D. McLaughlin, G. Celio, B. Dentinger, M. Padamsee, D. Hibbett, T. Y. James, E. Baloch, M. Grube, V. Reeb, V. Hofstetter, C. Schoch, A. E. Arnold, J. Miadlikowska, J. Spatafora, D. Johnson, S.Hambleton, M. Crockett, R. Shoemaker, G.-H. Sung, R. Lücking, T. Lumbsch, K. O’Donnell, M. Binder, P. Diederich, D. Ertz, C. Gueidan, K. Hansen, R. C. Harris, K. Hosaka, Y.-W. Lim, B. Matheny, H. Nishida, D. Pfister, J. Rogers, A. Rossman, I. Schmitt, H. Sipman, J. Stone, J. Sugiyama, R. Yahr, R. Vilgalys. 2004. Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. American Journal of Botany 91: 1446-1480. PDF
Hibbett, D. S. 2004. Trends in morphological evolution in homobasidiomycetes. Systematic Biology 53: 889-903. PDF
Binder, M., D. S. Hibbett*, K.-H. Larsson, E. Larsson, and E. Langer. 2005. The phylogenetic distribution of resupinate forms in the homobasidiomycetes. Systematics and Biodiversity 3: 113-157. PDF
Hibbett, D. S., R. H. Nilsson, M. Snyder, M. Fonseca, J. Costanzo, and M. Shonfeld. 2005. Automated Phylogenetic Taxonomy: An Example in the Homobasidiomycetes (Mushroom-Forming Fungi). Systematic Biology 54: 660-668. PDF
Wang, Z., M. Binder, and D. S. Hibbett. 2005. Life history and systematics of the aquatic discomycete Mitrula (Helotiales, Ascomycota) based on cultural, morphological, and molecular studies. American Journal of Botany 92: 1565-1574. PDF
Yang, Z.-L., P. B. Matheny, Z. Ge, and D. S. Hibbett. 2005. New Asian species of the genus Anamika (euagarics, hebelomatoid clade) based on morphology and ribosomal DNA sequences. Mycological Research 109: 1259-1267. PDF
Frøslev, T. G., P. B. Matheny, and D. S. Hibbett. 2005. Lower level relationships in the mushroom genus Cortinarius (Basidiomycota, Agaricales): a comparison of RPB1, RPB2 and ITS phylogenies. Molecular Phylogenetics and Evolution 37: 602-618. PDF
Binder, M., D. S. Hibbett, Z. Wang, and W. Farnham. 2006. Evolutionary origins of Mycaureola dilseae, a basidiomycete pathogen of the subtidal red alga Dilsea carnosa. American Journal of Botany 93: 547-556. PDF
Wang Z., M. Binder, C. L. Schoch, P. R. Johnston , J. W. Spatafora, and D. S. Hibbett. 2006. Evolution of helotialean fungi (Leotiomycetes, Pezizomycotian): a nuclear rDNA phylogeny. Molecular Phylogenetics and Evolution. PDF
James, T. Y., F. Kauff, C. Schoch, P. B. Matheny, V. Hofstetter, C. Cox, G. Celio, C. Gueidan, E. Fraker, J. Miadlikowska, H. T. Lumbsch, A. Rauhut, V. Reeb, A. E. Arnold, A. Amtoft, J. E. Stajich, K. Hosaka, G.-H. Sung, D. Johnson, B. O'Rourke, M. Crockett, M. Binder, J. M. Curtis, J. C. Slot, Z. Wang, A. W. Wilson, A. Schüßler, J. E. Longcore, K. O'Donnell, S. Mozley-Standridge, D. Porter, P. M. Letcher, M. J. Powell, J. W. Taylor, M. M. White, G. W. Griffith, D. R. Davies, R. A. Humber, J. B. Morton, J. Sugiyama, A. Y. Rossman, J. D. Rogers, D. H. Pfister, D. Hewitt, K. Hansen, S. Hambleton, R. A. Shoemaker, J. Kohlmeyer, B. Volkmann-Kohlmeyer, R. A. Spotts, M. Serdani, P. W. Crous, K. W. Hughes, K. Matsuura, E. Langer, G. Langer, W. A. Untereiner, R. Lücking, B. Büdel, D. M. Geiser, A. Aptroot, P. Diederich, I. Schmitt, M. Schultz, R. Yahr, D. Hibbett, F Lutzoni, D. McLaughlin, J. Spatafora, and R. Vilgalys. 2006. Reconstructing the early evolution of the fungi using a six gene phylogeny. Nature. PDF
Also see accompanying News and Views piece by Tom Bruns (PDF).
Dai Y.C., Z. Wang, M. Binder, and D. S. Hibbett. 2006. Phylogeney and a new species of Sparassis (Polyporales, Basidiomycota): evidence from mitochondrial atp6, nuclear rDNA and rpb2 genes. Mycologia 98: 584-592. PDF
Blanco-Dios, J.B., Z. Wang, M. Binder, and D. S. Hibbett. 2006. A new Sparassis from Spain described using morphological and molecular data. Mycological Research 110: 1227-1231. PDF
Matheny, P. B., J. A. Gossman, P. Zalar, T. K. Arun Kumar, and D. S. Hibbett. 2006. Resolving the phylogenetic position of the Wallemiomycetes: an enigmatic major lineage of Basidiomycota. Canadian Journal of Botany 84: 1794-1805. PDF
Hibbett, D. S. 2006. A Phylogenetic overview of the Agaricomycotina. Mycologia 98: 917-925. PDF
Matheny, P. B., J. M. Curtis, V. Hofstetter, M. C. Aime, J.-M. Moncalvo, Z. W. Ge, Z. L. Yang, J. C. Slot, J. F. Ammirati, T. J. Baroni, N. L. Bougher, K. W. Hughes, D. J. Lodge, R. W. Kerrigan, M. T. Seidl, D. K. Aanen, M. DeNitis, G. M. Daniele, D. E. Desjardin, B. R. Kropp, L. L. Norvell, A. Parker, E. C. Vellinga, R. Vilgalys. and D. S. Hibbett. 2006. Major clades of Agaricales: a multi-locus phylogenetic overview. Mycologia 98: 982-995. PDF
Binder, M., and D. S. Hibbett. 2006. Molecular systematics and biological diversification of Boletales. Mycologia 98: 971-981. PDF
Aime, M. C., P. B. Matheny, D. A. Henk, E. M. Frieders, R. H. Nilsson, D. J. McLaughlin, L. J. Szabo, and D. S. Hibbett. 2006. An overview of the higher-level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences. Mycologia 98: 896-905. PDF
Wang, Z., P. R. Johnston, S. Takamatsu, J. W. Spatafora, and D. S. Hibbett. 2006. Toward a phylogenetic classification of the Leotiomycetes based on rDNA data. Mycologia 98: 1065-1075. PDF
Blackwell, M., D. S. Hibbett, J. W. Taylor, and J. W. Spatafora. 2006. Research coordination networks: a phylogeny for kingdom Fungi (Deep Hypha). Mycologia 98: 829-837. PDF
Matheny, P. B., Z. Wang, M. Binder, J. M. Curtis, Y. W. Lim, R. H. Nilsson, K. W. Hughes, V. Hofstetter, J. F. Ammirati, C. Schoch, G. E. Langer, D. J. McLaughlin, A. W. Wilson, T. Frøslev, Z. W. Ge, R. W. Kerrigan, J. C. Slot, E. C. Vellinga, Z. L. Liang, T. J. Baroni, M. Fischer, K. Hosaka, K. Matsuura, M. T. Seidl, J. Vaura, and D. S. Hibbett. 2007. Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi). Molecular Phylogenetics and Evolution 43: 430-451. PDF
Kumar, A., Celio, G. C., Matheny, P. B., McLaughlin, D. J., Hibbett, D. S., and Manimohan, P. 2007. Phylogenetic relationships of Auriculoscypha based on ultrastructural and molecular studies. Mycological Research 111: 268-274. PDF
Louzan, R., Wilson, A. W., Binder, M., and D. S. Hibbett. 2007. Phylogenetic placement of Diplocystis wrightii in the Sclerodermatineae (Boletales) based on nuclear ribosomal large subunit DNA sequences. Mycoscience 48: 66-69. PDF
Hibbett, D. S., M. Binder, J. F. Bischoff, M. Blackwell, P. F. Cannon, O. E. Eriksson, S. Huhndorf, T. James, P. M. Kirk, R. Lücking, T. Lumbsch, F. Lutzoni, P. B. Matheny, D. J. Mclaughlin, M. J. Powell, S. Redhead, C. L. Schoch, J. W. Spatafora, J. A. Stalpers, R. Vilgalys, M. C. Aime, A. Aptroot, R. Bauer, D. Begerow, G. L. Benny, L. A. Castlebury, P. W. Crous, Y.-C. Dai, W. Gams, D. M. Geiser, G. W. Griffith, C. Gueidan, D. L. Hawksworth, G. Hestmark, K. Hosaka, R. A. Humber, K. Hyde, J. E. Ironside, U. Kõljalg, C. P. Kurtzman, K.-H. Larsson, R. Lichtwardt, J. Longcore, J. Miądlikowska, A. Miller, J.-M. Moncalvo, S. Mozley-Standridge, F. Oberwinkler, E. Parmasto, V. Reeb, J. D. Rogers, C. Roux, L. Ryvarden, J. P. Sampaio, A. Schüßler, J. Sugiyama, R. G. Thorn, L. Tibell, W. A. Untereiner, C. Walker, Z. Wang, A. Weir, M. Weiß, M. M. White, K. Winka, Y.-J. Yao, N. Zhang. 2007. A higher-level phylogenetic classification of the Fungi. Mycological Research 111: 509-547. PDF
Wilson, A. W., E. A. Hobbie, and D. S. Hibbett. 2007. The ectomycorrhizal status of Calostoma cinnabarinum determined using isotopic, molecular, and morphological methods. Canadian Journal of Botany 85: 385-393. PDF
Slot, J. C., K. Hallstrom, P. B. Matheny, and D. S. Hibbett. 2007. Diversification of NRT2 and its fungal homologs. Molecular Biology and Evolution 24: 1731-1743. PDF
Slot, J. C., and D. S. Hibbett. 2007. Horizontal transfer of a nitrate assimilation gene cluster and ecological transitions in fungi: a phylogenetic study. PLoS One 10:e1097. PDF
www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0001097
Hibbett, D. S. 2007. After the gold rush, or before the flood? Evolutionary morphology of mushroom-forming fungi (Agaricomycetes) in the early 21st century. Mycological Research 111: 1001-1018. PDF
Morgenstern, I., S. Klopman, and D. S. Hibbett. 2008. Molecular evolution and diversity of lignin degrading heme peroxidases in the homobasidiomycetes. Journal of Molecular Evolution DOI 10.1007/s00239-008-9079-3. PDF